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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119824970_119825941_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119824970 - 119825941
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTACA
Flanking Amino Acid:
DNPATETEESEIPVQTEDYS
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.7
80.2
30.7
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
62.6
0.39
1.9
76.8
39.9

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000045451
119818252 - 119875477
57226
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000022689
119765829 - 119875014
109186