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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119826818_119828517_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119826818 - 119828517
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTACTCTGAATT
Flanking Amino Acid:
HEEETETQDTAVEDLPEEVH
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
62
42.2
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38.8
-1.3
3.4
57
47.3
Minor BPS
65
0.55
1.4
79.16
36.6

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000045451
119818252 - 119875477
57226
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000022689
119765829 - 119875014
109186