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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119828557_119830432_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119828557 - 119830432
Intron Length:
1876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATGAAAA
Flanking Amino Acid:
RVHGDYDEEHEPKHEEETET
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
65.7
33.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
36
-1.6
3.3
43.2
46.4
Minor BPS
52.2
0.06
1.8
65.67
39.9

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000045451
119818252 - 119875477
57226