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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119831820_119833433_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119831820 - 119833433
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATTT
5'SS Class:
major
3'SS Sequence:
ATTTACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTACTTTACA
Flanking Amino Acid:
ATQPETYEVPVSYDYGMDVE
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
76.6
32.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.9
0.76
0.8
77.1
36.2
Minor 5ss
49.3
-0
2.9
73.4
43.4
Minor BPS
66.3
0.51
1.8
79.11
36.3

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000045451
119818252 - 119875477
57226
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000035548
119818252 - 119869947
51696