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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119833488_119834258_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119833488 - 119834258
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGAA
5'SS Class:
major
3'SS Sequence:
CTCAATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTCTCAATT
Flanking Amino Acid:
DYETPDSFQKDADPVDLGAT
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
70.3
35.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.9
76.3
37.3
Minor 5ss
43.6
-0.7
3
57.6
47.1
Minor BPS
71.6
0.76
1.4
85.18
35.1

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000045451
119818252 - 119875477
57226
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695