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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119834421_119836590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119834421 - 119836590
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTCTCTAACA
Flanking Amino Acid:
QPDEQSFVKSAEGHEDVDES
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.3
0.41
1
68.5
37.2
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
71.4
0.67
1.6
81.48
33.3

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007063
119765829 - 119875014
109186