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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119836681_119850412_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
119836681 - 119850412
Intron Length:
13732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTCAC
5'SS Class:
major
3'SS Sequence:
CTGAAAAATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AACTTTATAACT
Flanking Amino Acid:
EESEASDDVDGLKERSVPEQ
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.2
40.8
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
57.2
0.16
1.1
48.7
42.8
Minor 5ss
33.6
-1.9
3.1
40.7
39.9
Minor BPS
57.7
0.32
1.6
71.86
39.1

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045451
119818252 - 119875477
57226