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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119836681_119856468_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
119836681 - 119856468
Intron Length:
19788

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGAAAAATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AACTTTATAACT
Flanking Amino Acid:
FDVEDAKVLLGLKERSVPEQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
57.2
0.16
1.1
48.7
42.8
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
57.7
0.32
1.6
71.86
39.1

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000022689
119765829 - 119875014
109186