Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119841172_119843498_R

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

119841172 - 119843498

Intron Length:

2327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTTTAA

5'SS Class:

major

3'SS Sequence:

GAAAAAAAAAAAG|T

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TCTTTTTTAACT

Flanking Amino Acid:

GVAKKKTKVKVKEAIKEPLK

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

73.2

33.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

41.6

-0.4

1.1

25.5

33.6

Minor 5ss

38.5

-1.3

49.6

46.6

Minor BPS

82.6

1.1

90.89

33.1

Associated Gene:

Gene:

ASPH

Ensembl Gene ID:

ENSAPLG00000006796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023326

119840855 - 119875014

34160