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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119857818_119858635_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119857818 - 119858635
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACCATGCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATATTTTTACCA
Flanking Amino Acid:
FELVDYEEVLAKAKDFRYNL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
62.4
0.28
1
54.6
39.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
61.3
0.35
1.6
69.76
36.7

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000035548
119818252 - 119869947
51696
ENSAPLT00000023326
119840855 - 119875014
34160
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000017543
119818252 - 119875014
56763
ENSAPLT00000045451
119818252 - 119875477
57226