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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119858786_119862513_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119858786 - 119862513
Intron Length:
3728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATCC
5'SS Class:
major
3'SS Sequence:
CTTATTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
MADDTETKHGGSKNG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
63
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.6
0.69
0.9
76.8
36
Minor 5ss
37.5
-1.4
3.3
51.7
45
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045451
119818252 - 119875477
57226
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000035548
119818252 - 119869947
51696