About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119882444_119883761_F

Intron Information:

Intron Rank:
147462
Intron Class:
major
Intron Phase:
Intron Coordinates:
119882444 - 119883761
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATAATT
5'SS Class:
major
3'SS Sequence:
CTGTTGCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
GTGCCATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
79.2
34
Major BPS
66.3
0.41
1
61
37.5
Major PPT
63.8
0.31
1
59
37.1
Minor 5ss
39.6
-1.2
3.1
55.6
42.7
Minor BPS
52.1
0.14
1.9
71.83
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029409
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036788
119882334 - 119886339
4006
ENSAPLT00000017279
119882334 - 119884997
2664