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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119884387_119884910_F

Intron Information:

Intron Rank:
147464
Intron Class:
major
Intron Phase:
Intron Coordinates:
119884387 - 119884910
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAC
U12 Branch Point Sequence:
CTCTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
61.5
0.29
1
58.7
38.1
Major PPT
83.8
0.76
0.7
79
26.7
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
61.6
0.36
1.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029409
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017279
119882334 - 119884997
2664