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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11993138_11998946_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11993138 - 11998946
Intron Length:
5809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CCTTCTTGAAAT
Flanking Amino Acid:
VKAKVYFVYEGYQGMVDGGD
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.7
0.94
0.5
92.2
18.3
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
60.3
0.4
1.6
73.72
43.2

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298
ENSAPLT00000034198
11985117 - 12029281
44165