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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119931855_120108769_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119931855 - 120108769
Intron Length:
176915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTTTCTTACAG
Flanking Amino Acid:
TLIFLCSLQLLAALERQIFD
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
NKAIN3
Ensembl Gene ID:
ENSAPLG00000024234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007325
119931801 - 120300872
369072