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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11999025_11999987_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11999025 - 11999987
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATAAATTAAAA
Flanking Amino Acid:
WESVSSILQVGGTVIGSARC
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
49.6
-0
1.9
65.77
39.2

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034198
11985117 - 12029281
44165
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298