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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12005417_12005982_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12005417 - 12005982
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACT
Flanking Amino Acid:
RLPLMECVQMTQEVQKAMDE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.9
0.6
1
75.7
38.5
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
73.6
0.82
1.6
90.89
33.1

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034198
11985117 - 12029281
44165
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298