About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12006048_12007578_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12006048 - 12007578
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
RFVEAVRLRGRSFENNLNTY
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.8
82
34.7
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298
ENSAPLT00000034198
11985117 - 12029281
44165