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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12007649_12010805_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12007649 - 12010805
Intron Length:
3157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGCTTATTAAAG
Flanking Amino Acid:
HKKPDAELPKTNFNVAVLNV
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
51.9
-0
1.8
58.28
43

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298
ENSAPLT00000034198
11985117 - 12029281
44165