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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120108908_120118111_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120108908 - 120118111
Intron Length:
9204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCTTTCATC
Flanking Amino Acid:
IQFRPRYIVVYTVWTALWVT
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71
0.47
1
69.2
41.8
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
59.8
0.29
1.8
73.34
38.7

Associated Gene:

Gene:
NKAIN3
Ensembl Gene ID:
ENSAPLG00000024234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034943
120108605 - 120233112
124508
ENSAPLT00000028258
120108605 - 120306087
197483
ENSAPLT00000021798
120108605 - 120306087
197483
ENSAPLT00000007325
119931801 - 120300872
369072