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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120118193_120222123_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120118193 - 120222123
Intron Length:
103931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGCTTGAGGATT
Flanking Amino Acid:
FYLEVGGLSKETDLMTFNIS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69
0.43
0.8
60.8
35.2
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
37.1
-0.9
2.1
50.75
37.3

Associated Gene:

Gene:
NKAIN3
Ensembl Gene ID:
ENSAPLG00000024234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028258
120108605 - 120306087
197483
ENSAPLT00000021798
120108605 - 120306087
197483
ENSAPLT00000007325
119931801 - 120300872
369072
ENSAPLT00000034943
120108605 - 120233112
124508