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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12011870_12012324_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12011870 - 12012324
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
TAATAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGGTTTAATA
Flanking Amino Acid:
GQGGSILGTKRTLPAKYLEK
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
62.6
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
1
70.8
43.8
Minor 5ss
44.3
-0.6
2.9
58.1
46
Minor BPS
61.6
0.36
1.8
74.34
38.4

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036034
11985117 - 12073414
88298
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298