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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12013407_12018962_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12013407 - 12018962
Intron Length:
5556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ACCACTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
ATATTTGTACCA
Flanking Amino Acid:
ADTALNTITDAYESCLQLHE
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
66.5
0.37
1
61.7
39.3
Minor 5ss
40.2
-1.1
3.1
54.8
42.5
Minor BPS
46.4
-0.2
2.2
61.43
39.2

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019163
11985117 - 12029281
44165