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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12023746_12024901_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12023746 - 12024901
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATCTCTTTAAAA
Flanking Amino Acid:
EEQFDIRELQANVEHLTEKM
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.2
0.59
0.9
69.4
41.7
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
71.3
0.67
1.3
74.83
36.6

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036034
11985117 - 12073414
88298
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298