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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12028511_12029097_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12028511 - 12029097
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
CGCCACACCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
CCTTCCGCCACA
Flanking Amino Acid:
VAELKNETDFVHRIPMEQCS
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
72.7
38.2
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
58.8
0.2
0.9
49.9
32.4
Minor 5ss
47.4
-0.3
2.5
60.3
44.3
Minor BPS
43.7
-0.5
2.5
58.78
47

Associated Gene:

Gene:
PFKP
Ensembl Gene ID:
ENSAPLG00000012725
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034198
11985117 - 12029281
44165
ENSAPLT00000019163
11985117 - 12029281
44165
ENSAPLT00000013324
11985117 - 12073414
88298
ENSAPLT00000036034
11985117 - 12073414
88298