Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12029122_12073195_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12029122 - 12073195

Intron Length:

44074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGCTGAA

5'SS Class:

major

3'SS Sequence:

AGTGATCGCAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

CAGATCTGAAGT

Flanking Amino Acid:

DFVHRIPMEQCSQLQMQAKY

Intron Amino Acid Position:

744

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.7

0.25

1.2

57.3

37.7

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

44.6

-0.3

1.7

42.5

Minor 5ss

30.8

-2.2

3.4

36.2

43.3

Minor BPS

46.5

-0.1

1.8

58.11

44.6

Associated Gene:

Gene:

PFKP

Ensembl Gene ID:

ENSAPLG00000012725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036034

11985117 - 12073414

88298

ENSAPLT00000013324

11985117 - 12073414

88298