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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120300802_120304574_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120300802 - 120304574
Intron Length:
3773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTAAGTAATT
Flanking Amino Acid:
HVELKPVKPVGRSK*
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.7
79.8
32.4
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
47.6
-0.1
2.3
73.95
43

Associated Gene:

Gene:
NKAIN3
Ensembl Gene ID:
ENSAPLG00000024234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021798
120108605 - 120306087
197483