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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12030655_12031252_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12030655 - 12031252
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
NSDNLVDVSNKYLAVGKSTR
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794