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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120323126_120333860_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120323126 - 120333860
Intron Length:
10735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTCTTCAACA
Flanking Amino Acid:
YYIADFFVNEALFSSLQLSC
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.5
0.62
0.9
73.9
35.5
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
71.8
0.68
1.5
79.46
37

Associated Gene:

Gene:
GGH
Ensembl Gene ID:
ENSAPLG00000010846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028664
120320234 - 120340861
20628