Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12032844_12032977_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12032844 - 12032977

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTTCT

5'SS Class:

strong_major

3'SS Sequence:

ATTCTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

GTTTCAACAAAA

Flanking Amino Acid:

VDAPIAPSDKEIAYIQSLH*

Intron Amino Acid Position:

969

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.6

32.9

Major BPS

0.57

1.2

77.7

37.1

Major PPT

87.6

0.85

0.7

85.2

28.8

Minor 5ss

41.8

-0.9

59.5

44.9

Minor BPS

46.1

-0.3

2.1

64.84

40.3

Associated Gene:

Gene:

PITRM1

Ensembl Gene ID:

ENSAPLG00000013443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038651

12032555 - 12059354

26800