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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12033124_12034393_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12033124 - 12034393
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AAGCCCTTAATT
Flanking Amino Acid:
HNGIFTFYSYRDPNSLATLK
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
72
0.77
1.2
77.39
38.8

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794