Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120333999_120334913_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

120333999 - 120334913

Intron Length:

915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAA

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TGTTCTTTGATG

Flanking Amino Acid:

GEVEYISTMEAYKYPIYSVQ

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

76.9

33.7

Major BPS

0.85

0.9

39.9

Major PPT

78.7

0.65

72.9

42.2

Minor 5ss

31.4

-2.1

3.1

39.2

46.2

Minor BPS

70.6

0.5

1.3

70.84

36.6

Associated Gene:

Gene:

GGH

Ensembl Gene ID:

ENSAPLG00000010846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033878

120329639 - 120340910

11272

ENSAPLT00000028664

120320234 - 120340861

20628

ENSAPLT00000011319

120330944 - 120341134

10191