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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120335005_120335108_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120335005 - 120335108
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCCTCCTTATTG
Flanking Amino Acid:
NFHRWSLSMENFTKNEKLHK
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82
0.72
0.8
76.7
30.4
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
61.5
0.22
1.7
62.57
46

Associated Gene:

Gene:
GGH
Ensembl Gene ID:
ENSAPLG00000010846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033878
120329639 - 120340910
11272
ENSAPLT00000028664
120320234 - 120340861
20628
ENSAPLT00000011319
120330944 - 120341134
10191