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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120335216_120336097_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120335216 - 120336097
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAG
U12 Branch Point Sequence:
CTCTTTGTGACA
Flanking Amino Acid:
GLALPLNFTSAAKDSRLFKN
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
63.6
0.34
1.5
63.1
44.4
Major PPT
74.4
0.55
1
71.2
38.5
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
48.1
-0.1
2
60.52
40.5

Associated Gene:

Gene:
GGH
Ensembl Gene ID:
ENSAPLG00000010846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033878
120329639 - 120340910
11272
ENSAPLT00000028664
120320234 - 120340861
20628
ENSAPLT00000011319
120330944 - 120341134
10191