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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120336237_120337281_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120336237 - 120337281
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TACTTTTTATTT
Flanking Amino Acid:
AKIFYRKALEANDKGDYFPI
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
1
83.2
31.8
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
GGH
Ensembl Gene ID:
ENSAPLG00000010846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011319
120330944 - 120341134
10191
ENSAPLT00000033878
120329639 - 120340910
11272
ENSAPLT00000028664
120320234 - 120340861
20628