Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120337367_120338968_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

120337367 - 120338968

Intron Length:

1602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTGCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTGTTGCTAATC

Flanking Amino Acid:

VYDKIFHSINGVLFPGGGVD

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

87.9

29.3

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

81.6

0.71

0.9

77.7

36.7

Minor 5ss

45.7

-0.5

2.8

45.5

Minor BPS

48.1

-0.1

2.3

66.06

40.3

Associated Gene:

Gene:

GGH

Ensembl Gene ID:

ENSAPLG00000010846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033878

120329639 - 120340910

11272

ENSAPLT00000028664

120320234 - 120340861

20628

ENSAPLT00000011319

120330944 - 120341134

10191