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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120339020_120340285_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120339020 - 120340285
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTCTGTAACT
Flanking Amino Acid:
ESAGARVVPLRLNLSDEVYD
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
69
0.67
2
88.47
36.7

Associated Gene:

Gene:
GGH
Ensembl Gene ID:
ENSAPLG00000010846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033878
120329639 - 120340910
11272
ENSAPLT00000028664
120320234 - 120340861
20628
ENSAPLT00000011319
120330944 - 120341134
10191