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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120343957_120345910_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120343957 - 120345910
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATAT
Flanking Amino Acid:
PFLTEKIKQRVHMHGNNYMQ
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.8
78.6
35.1
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
55.7
0.26
2
81.98
39.1

Associated Gene:

Gene:
TTPA
Ensembl Gene ID:
ENSAPLG00000025244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032252
120341893 - 120358182
16290