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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12034520_12035059_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12034520 - 12035059
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGCTGTTAATA
Flanking Amino Acid:
TVPYTATDYASLRILARLMT
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83
0.74
0.8
76.8
30.4
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
54
0.12
2
67.88
39.2

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794