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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120348835_120350150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120348835 - 120350150
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATTTACTC
Flanking Amino Acid:
YGSKVLIYRIGQWDPKLFTA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
82
0.72
0.8
78.5
35.1
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
54.6
0.12
1.8
66.44
40.1

Associated Gene:

Gene:
TTPA
Ensembl Gene ID:
ENSAPLG00000025244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032252
120341893 - 120358182
16290