About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120350305_120358008_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120350305 - 120358008
Intron Length:
7704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
TTATTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGCACATTTATT
Flanking Amino Acid:
RDFNVDLAWRLLKNYQKWRI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
61.3
45.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
35.7
-1.6
3.2
38.2
46.7
Minor BPS
48.3
-0
1.9
66.83
43.5

Associated Gene:

Gene:
TTPA
Ensembl Gene ID:
ENSAPLG00000025244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032252
120341893 - 120358182
16290