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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12035173_12037363_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12035173 - 12037363
Intron Length:
2191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TATCTGCTAACT
Flanking Amino Acid:
RKPVRPHVIEDPTFKPCQMK
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
82.6
0.73
0.7
82
29.2
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
48.6
-0
2.3
75.2
41.1

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025134
12030561 - 12059354
28794