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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12037485_12038423_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12037485 - 12038423
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
GTGCTTTTAACA
Flanking Amino Acid:
KKYLLNSDNIRCSVNAAPQQ
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
73.7
0.53
1
69.2
40.7
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
66.1
0.5
1.2
68.93
37.4

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794