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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12038525_12038645_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12038525 - 12038645
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
CCTTCCTGCACA
Flanking Amino Acid:
LQEMFSGMDQVKLMKRIAEM
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.2
28.8
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
72.8
0.51
0.9
67.5
32.4
Minor 5ss
29
-2.4
3
39.4
46.1
Minor BPS
55.9
0.18
2
67.78
44.7

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014055
12030561 - 12059354
28794
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794