About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12038812_12039251_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12038812 - 12039251
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TACTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAGAA
U12 Branch Point Sequence:
TTCTCCTGAGAT
Flanking Amino Acid:
MMNLWSEIFNNPRFEEEEHF
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.1
56.8
37.2
Major BPS
48.8
-0
1.1
44.7
38.7
Major PPT
86.3
0.82
0.7
84.3
30.1
Minor 5ss
37.7
-1.4
3.5
49.3
41.8
Minor BPS
58
0.33
1.8
78.48
43.3

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794