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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_120393345_120404491_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120393345 - 120404491
Intron Length:
11147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACATTATTT
Flanking Amino Acid:
RQEEEEAMRRERNRNKQ*
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
53.7
0.19
1.9
75.13
41.4

Associated Gene:

Gene:
YTHDF3
Ensembl Gene ID:
ENSAPLG00000011329
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011785
120383506 - 120405454
21949