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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12040212_12040943_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12040212 - 12040943
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
TTATTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTTTTCACA
Flanking Amino Acid:
YVPLFCNVITKMGCGALDYR
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.7
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.5
0.84
0.7
83.7
31.1
Minor 5ss
28.4
-2.5
3.4
38.5
40.9
Minor BPS
63.3
0.41
1.7
75.26
36.4

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794