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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12041077_12042555_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12041077 - 12042555
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TTTTGATCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTTGATC
Flanking Amino Acid:
PFTVLETTLTADEVPVQYCA
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.6
0.55
0.8
67
39.5
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
68.3
0.56
1.1
73.21
31.6

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794