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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12042673_12043794_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12042673 - 12043794
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAACATG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAA
U12 Branch Point Sequence:
CTTTCTTTATTA
Flanking Amino Acid:
EEEKKQIFEKGLELIDLQSK
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
67.2
43.8
Major BPS
56
0.15
1.3
65.4
38
Major PPT
80.8
0.69
0.8
81.9
28.4
Minor 5ss
38.7
-1.3
2.9
49.1
46.8
Minor BPS
66.7
0.52
1.6
74.5
38.1

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794