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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12048448_12050188_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12048448 - 12050188
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTACTTGTAACT
Flanking Amino Acid:
GVGTDFSPDVGFNSSTREAY
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85
0.79
0.9
77.2
41.6
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
49.9
0.07
2
70.46
40.5

Associated Gene:

Gene:
PITRM1
Ensembl Gene ID:
ENSAPLG00000013443
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038651
12032555 - 12059354
26800
ENSAPLT00000025134
12030561 - 12059354
28794
ENSAPLT00000014055
12030561 - 12059354
28794